NMR structure of the human doppel protein

T Lührs, R Riek, P Güntert, K Wüthrich - Journal of molecular biology, 2003 - Elsevier
T Lührs, R Riek, P Güntert, K Wüthrich
Journal of molecular biology, 2003Elsevier
The NMR structure of the recombinant human doppel protein, hDpl (24–152), contains a
flexibly disordered “tail” comprising residues 24–51, and a globular domain extending from
residues 52 to 149 for which a detailed structure was obtained. The globular domain
contains four α-helices comprising residues 72–80 (α1), 101–115 (α2a), 117–121 (α2b), and
127–141 (α3), and a short two-stranded anti-parallel β-sheet comprising residues 58–60
(β1) and 88–90 (β2). The fold of the hDpl globular domain thus coincides nearly identically …
The NMR structure of the recombinant human doppel protein, hDpl(24–152), contains a flexibly disordered “tail” comprising residues 24–51, and a globular domain extending from residues 52 to 149 for which a detailed structure was obtained. The globular domain contains four α-helices comprising residues 72–80 (α1), 101–115 (α2a), 117–121 (α2b), and 127–141 (α3), and a short two-stranded anti-parallel β-sheet comprising residues 58–60 (β1) and 88–90 (β2). The fold of the hDpl globular domain thus coincides nearly identically with the structure of the murine Dpl protein. There are close similarities with the human prion protein (hPrP) but, similar to the situation with the corresponding murine proteins, hDpl shows marked local differences when compared to hPrP: the β-sheet is flipped by 180° with respect to the molecular scaffold formed by the four helices, and the β1-strand is shifted by two residues toward the C terminus. A large solvent-accessible hydrophobic cleft is formed on the protein surface between β2 and α3, which has no counterpart in hPrP. The helix α2 of hPrP is replaced by two shorter helices, α2a and α2b. The helix α3 is shortened by more than two turns when compared with α3 of hPrP, which is enforced by the positioning of the second disulfide bond in hDpl. The C-terminal peptide segment 144–149 folds back onto the loop connecting β2 and α2. All but four of the 20 conserved residues in the globular domains of hPrP and hDpl appear to have a structural role in maintaining a PrP-type fold. The conservation of R76, E96, N110 and R134 in hDpl, corresponding to R148, E168, N183 and R208 in hPrP suggests that these amino acid residues might have essential roles in the so far unknown functions of PrP and Dpl in healthy organisms.
Elsevier